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Hello,
JEE stands for Joint Entrance Examination and id conducted by NTA for admission in B.E, B.Tech and B.Arch course in different government and private colleges in India. On the other hand MHT CET (or Maharashtra Common Entrance Test) is a state level entrance exam conducted by the State Common Entrance Test Cell, Maharastra for admission to undergraduate engineering, pharmacy and agriculture courses. For admission in BCA course, most of the colleges conduct their own entrance exam and based on the results of entrance they take admissions.So, you will have to apply individually in the colleges where you want to pursue BCA.
I hope this helps.